SMTL ID : 7dlm.1

Short chain dehydrogenase (SCR) crystal structure with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.42, S.43, S.44, G.45, G.46, I.47, Y.66, N.67, S.68, H.69, C.91, N.92, I.93, N.119, A.120, G.121, V.122, V.144, T.171, S.172, S.173, Y.188, K.192, P.217, G.218, Y.219, I.220, T.222, I.224 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:P.217 Hydrogen bonds: A:G.42, A:S.44, A:S.44, A:G.45, A:G.46, A:I.47, A:N.67, A:S.68, A:H.69, A:N.92, A:I.93, A:N.119, A:G.121, A:K.192, A:I.220, A:I.220, A:T.222, A:T.222 Water bridges: A:G.48, A:N.67, A:N.67, A:N.119 Salt bridges: A:H.69 NDP.2: 29 residues within 4Å: Chain B: G.42, S.43, S.44, G.45, G.46, I.47, Y.66, N.67, S.68, H.69, C.91, N.92, I.93, N.119, A.120, G.121, V.122, V.144, T.171, S.172, S.173, Y.188, K.192, P.217, G.218, Y.219, I.220, T.222, I.224 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:P.217 Hydrogen bonds: B:G.42, B:S.44, B:S.44, B:G.45, B:G.46, B:I.47, B:N.67, B:S.68, B:H.69, B:N.92, B:I.93, B:N.119, B:G.121, B:Y.188, B:K.192, B:I.220, B:I.220, B:T.222 Water bridges: B:G.48, B:N.67, B:H.69, B:N.119, B:D.223 Salt bridges: B:H.69 NDP.3: 29 residues within 4Å: Chain C: G.42, S.43, S.44, G.45, G.46, I.47, Y.66, N.67, S.68, H.69, C.91, N.92, I.93, N.119, A.120, G.121, V.122, V.144, T.171, S.172, S.173, Y.188, K.192, P.217, G.218, Y.219, I.220, T.222, I.224 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:P.217 Hydrogen bonds: C:G.42, C:S.44, C:S.44, C:G.45, C:G.46, C:I.47, C:N.67, C:S.68, C:H.69, C:N.92, C:I.93, C:N.119, C:G.121, C:Y.188, C:K.192, C:I.220, C:I.220, C:T.222 Water bridges: C:G.48, C:N.67, C:N.67, C:H.69, C:N.119 Salt bridges: C:H.69 NDP.4: 29 residues within 4Å: Chain D: G.42, S.43, S.44, G.45, G.46, I.47, Y.66, N.67, S.68, H.69, C.91, N.92, I.93, N.119, A.120, G.121, V.122, V.144, T.171, S.172, S.173, Y.188, K.192, P.217, G.218, Y.219, I.220, T.222, I.224 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:P.217 Hydrogen bonds: D:G.42, D:S.44, D:S.44, D:G.45, D:G.46, D:I.47, D:N.67, D:S.68, D:H.69, D:N.92, D:I.93, D:N.119, D:G.121, D:K.192, D:I.220, D:I.220, D:T.222, D:T.222 Water bridges: D:G.48, D:N.67, D:H.69, D:N.119, D:D.223, D:D.223 Salt bridges: D:H.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Oligomeric interactions maintain active-site structure in a noncooperative enzyme family. Embo J. (2022)

Release Date

2022-04-06

Peptides

Carbonyl Reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Carbonyl Reductase

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