SMTL ID : 7dn8.1 (3 other biounits)

Crystal structure of Salmonella effector SopF in complex with ARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain B: K.18, T.19, T.36, D.55 Ligands: GDP.2 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.19, B:T.36, H2O.2, H2O.3, H2O.3

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain B: L.13, D.14, A.15, A.16, G.17, K.18, T.19, T.20, T.33, N.114, K.115, D.117, L.118, C.147, A.148, T.149 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:A.15, B:A.16, B:G.17, B:K.18, B:T.19, B:T.19, B:T.20, B:T.20, B:T.33, B:N.114, B:K.115, B:K.115, B:A.148, B:T.149, B:T.149 Water bridges: B:K.18, B:T.19, B:T.36, B:T.36, B:D.117 Salt bridges: B:K.18, B:D.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., ARF GTPases activate Salmonella effector SopF to ADP-ribosylate host V-ATPase and inhibit endomembrane damage-induced autophagy. Nat.Struct.Mol.Biol. (2022)

Release Date

2021-12-15

Peptides

Putative cytoplasmic protein: A
ADP-ribosylation factor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative cytoplasmic protein

ADP-ribosylation factor 1

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