SMTL ID : 7dnf.1 (1 other biounit)

DARPin 63_B7 in complex with V3-IY (MN) crown mimetic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-2-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.124, H.125, L.126, E.127, I.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.126, A:E.127, A:E.127 Water bridges: A:G.124, A:H.125, A:E.127 SO4.2: 3 residues within 4Å: Chain B: R.3, H.5, I.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.3, B:I.6 SO4.3: 5 residues within 4Å: Chain C: G.58, H.59, L.60, E.61, I.62 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.60, C:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Friedrich, N. et al., Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization. Nat Commun (2021)

Release Date

2021-12-15

Peptides

DARPin 63_B7: AC
V3-IY (MN) crown mimetic peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

DARPin 63_B7

V3-IY (MN) crown mimetic peptide

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