SMTL ID : 7dno.1

Characterization of Peptide Ligands Against WDR5 Isolated Using Phage Display Technique

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x CYS- ARG- THR- LEU- PRO- PHE: CYS-ARG-THR-LEU-PRO-PHE(Non-covalent)

CYS-ARG-THR-LEU-PRO-PHE.1: 17 residues within 4Å: Chain A: A.26, S.28, A.44, S.70, D.71, D.86, F.112, C.113, F.128, S.154, Y.170, L.213, K.238, Y.239, C.240, F.242, L.300 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.26, A:F.112, A:F.112, A:K.238, A:L.300 Hydrogen bonds: A:S.70, A:D.86, A:F.112, A:C.240 Salt bridges: A:D.71 pi-Cation interactions: A:K.238 CYS-ARG-THR-LEU-PRO-PHE.2: 19 residues within 4Å: Chain B: A.26, V.27, S.28, A.44, S.70, D.71, D.86, Y.110, F.112, C.113, F.128, S.154, Y.170, L.213, K.238, Y.239, C.240, F.242, L.300 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.26, B:F.112, B:L.300 Hydrogen bonds: B:D.86, B:S.154, B:Y.170, B:C.240 Water bridges: B:S.70 Salt bridges: B:D.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, J. et al., Phage-Display Based Discovery and Characterization of Peptide Ligands against WDR5. Molecules (2021)

Release Date

2021-02-10

Peptides

WD repeat-containing protein 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

WD repeat-containing protein 5