SMTL ID : 7do4.1

Crystal structure of CD97-CD55 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: N.62, P.87, V.88 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: D.44, I.45, E.47, N.64, T.65, G.67, S.68 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.44, A:D.44, A:I.45, A:E.47, A:T.65 CA.3: 7 residues within 4Å: Chain A: D.96, V.97, E.99, N.115, T.116, G.118, S.119 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.96, A:D.96, A:E.99, A:T.116, A:S.119

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.18, I.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.18 NAG.5: 2 residues within 4Å: Chain A: N.88, S.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, M. et al., Structural basis for CD97 recognition of the decay-accelerating factor CD55 suggests mechanosensitive activation of adhesion GPCRs. J.Biol.Chem. (2021)

Release Date

2021-09-22

Peptides

Isoform 2 of Adhesion G protein-coupled receptor E5: A
Complement decay-accelerating factor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 2 of Adhesion G protein-coupled receptor E5

Complement decay-accelerating factor