SMTL ID : 7dog.1

Crystal structure of a nuclease and capping domain of SbcD from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.51, N.87, H.88, H.175, H.213 Ligands: MN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.51, A:H.175, A:H.213 MN.2: 6 residues within 4Å: Chain A: D.11, H.13, D.51, H.213, H.215 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.11, A:H.13, A:D.51, A:H.215 MN.3: 6 residues within 4Å: Chain B: D.11, H.13, D.51, H.213, H.215 Ligands: MN.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.11, B:H.13, B:D.51, B:H.215 MN.4: 6 residues within 4Å: Chain B: D.11, D.51, N.87, H.175, H.213 Ligands: MN.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.51, B:H.175, B:H.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J. et al., Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus. J.Microbiol (2021)

Release Date

2021-05-05

Peptides

Nuclease SbcCD subunit D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclease SbcCD subunit D