SMTL ID : 7doz.1

HIV-1 Protease D30N mutant in complex with Nelfinavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

2 x 1UN: 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE(Non-covalent)

1UN.1: 23 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, N.30, V.32, I.47, G.48, G.49, I.50, V.82, I.84, D.129, G.131, A.132, D.133, N.134, G.153, I.154, P.185, I.188 Ligands: 1UN.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.23, A:A.28, A:N.30, A:V.32, A:I.47, A:I.50, A:I.50, A:V.82, A:I.84, A:A.132, A:D.133, A:P.185, A:I.188 Hydrogen bonds: A:G.131, A:G.131, A:N.134 Water bridges: A:G.27, A:D.29, A:I.50, A:I.50 Salt bridges: A:D.25, A:D.129 1UN.2: 25 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, N.30, G.48, G.49, I.50, T.80, P.81, I.84, R.112, D.129, G.131, A.132, N.134, V.136, I.151, G.152, G.153, I.154, P.185, V.186, I.188 Ligands: 1UN.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.28, A:D.29, A:P.81, A:I.84, A:A.132, A:N.134, A:I.151, A:I.154, A:P.185, A:V.186, A:I.188 Hydrogen bonds: A:G.27, A:N.30 Water bridges: A:D.29, A:I.50, A:I.154 Salt bridges: A:D.25, A:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bihani, S.C. et al., Molecular basis for reduced cleavage activity and drug resistance in D30N HIV-1 protease. J.Biomol.Struct.Dyn. (2021)

Release Date

2021-10-27

Peptides

Protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease

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