SMTL ID : 7dqb.1

Crystal structure of an IclR homolog complexed with 4-hydroxybenzoate from Microbacterium hydrocarbonoxydans in P212121 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.1: 11 residues within 4Å: Chain A: Q.124, N.147, L.148, L.155, S.160, S.161, S.162, I.216, G.222, S.238, V.240 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.155, A:I.216, A:I.216, A:V.240, A:V.240 Hydrogen bonds: A:L.148, A:S.161, A:S.162, A:S.162, A:G.222, A:S.238 PHB.2: 9 residues within 4Å: Chain B: N.147, L.148, L.155, S.160, S.161, S.162, I.216, G.222, V.240 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.155, B:I.216, B:I.216, B:V.240, B:V.240 Hydrogen bonds: B:L.148, B:S.161, B:S.162, B:G.222 Water bridges: B:S.146, B:A.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akiyama, T. et al., Structural basis of the conformational changes in Microbacterium hydrocarbonoxydans IclR transcription factor homolog due to ligand binding. Biochim Biophys Acta Proteins Proteom (2021)

Release Date

2021-05-05

Peptides

IclR homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IclR homolog

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