SMTL ID : 7dqc.1

Crystal structure of nucleotide-free mutant A(S23C)3B(N64C)3 complex from Enterococcus hirae V-ATPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-3-3-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: I.142, K.155, M.327, R.387 No protein-ligand interaction detected (PLIP) GOL.2: 7 residues within 4Å: Chain A: I.131, T.135, E.136, D.141, I.142, S.384, D.385 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.142, A:S.384 GOL.3: 6 residues within 4Å: Chain A: M.34, T.74, E.76, A.77, S.79, K.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.76, A:S.79 Water bridges: A:Q.115 GOL.4: 13 residues within 4Å: Chain A: G.232, G.233, A.234, Y.373, E.374, S.376, G.377, V.415, V.416, Y.444 Chain D: T.194, F.195, E.196 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:A.234, A:E.374, A:S.376, A:V.415, D:E.196, D:E.196 GOL.5: 3 residues within 4Å: Chain A: F.513, D.514, D.515 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.513 GOL.6: 7 residues within 4Å: Chain A: V.214, K.231, D.330, R.378, E.388, G.389, S.390 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.330, A:E.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imamura, M. et al., The combination of high-speed AFM and X-ray crystallography reveals rotary catalytic mechanism of shaftless V1-ATPase. To Be Published

Release Date

2021-12-29

Peptides

V-type sodium ATPase catalytic subunit A: ABE
V-type sodium ATPase subunit B: CDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
C

C
D

D
E

F
F

V-type sodium ATPase catalytic subunit A

V-type sodium ATPase subunit B

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