SMTL ID : 7dsj.1

Anthranilate phosphoribosyltransferase from Saccharomyces cerevisiae in complex with PRPP and Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)

PRP.1: 19 residues within 4Å: Chain A: V.110, G.111, G.113, G.114, N.121, V.122, S.123, T.124, K.140, G.142, G.143, K.144, A.145, S.146, T.147, S.148, A.152, E.261 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.111, A:G.114, A:N.121, A:V.122, A:S.123, A:S.123, A:T.124, A:T.124, A:T.124, A:G.143, A:S.146, A:S.146, A:T.147, A:S.148 Water bridges: A:D.115, A:F.120, A:S.146, A:A.152 Salt bridges: A:K.140 PRP.3: 14 residues within 4Å: Chain B: V.110, G.111, G.113, G.114, N.121, V.122, S.123, T.124, K.140, G.142, G.143, A.152, E.261 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.111, B:G.114, B:N.121, B:V.122, B:S.123, B:S.123, B:S.123, B:T.124, B:G.143 Water bridges: B:A.152, B:A.152 Salt bridges: B:K.140

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: G.111, S.123, E.261 Ligands: PRP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.123, A:E.261, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain B: S.123, E.261 Ligands: PRP.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.123, B:E.261, B:E.261, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X. et al., Crystal structures of anthranilate phosphoribosyltransferase from Saccharomyces cerevisiae. Acta Crystallogr.,Sect.F (2021)

Release Date

2021-03-17

Peptides

Anthranilate phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anthranilate phosphoribosyltransferase