SMTL ID : 7dtc.1

voltage-gated sodium channel Nav1.5-E1784K

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.326, E.380, R.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.326, A:E.380 NAG.2: 1 residues within 4Å: Chain A: N.331 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: T.333, N.334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.334 NAG.4: 2 residues within 4Å: Chain A: N.361, D.1733 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.1733 Hydrogen bonds: A:N.361 NAG.5: 5 residues within 4Å: Chain A: H.321, N.371, C.384, L.385, K.386 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.386 Hydrogen bonds: A:N.371, A:C.384 NAG.6: 4 residues within 4Å: Chain A: N.1408, T.1410, E.1411, L.1436 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.1436 Hydrogen bonds: A:E.1411 NAG.7: 4 residues within 4Å: Chain A: S.916, L.918, N.1417, T.1419 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.918 Hydrogen bonds: A:N.1417 NAG.8: 2 residues within 4Å: Chain A: N.1422, N.1423 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.1422 NAG.9: 5 residues within 4Å: Chain A: N.1431, G.1434, L.1436, Y.1437, W.1438 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.1438 Hydrogen bonds: A:N.1431, A:L.1436, A:Y.1437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structure of human Na v 1.5 reveals the fast inactivation-related segments as a mutational hotspot for the long QT syndrome. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-03-24

Peptides

Sodium channel protein type 5 subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sodium channel protein type 5 subunit alpha