SMTL ID : 7dtz.1

FGFR4 complex with a covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x HHL: N-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3-methyl-phenyl]-2-fluoranyl-prop-2-enamide(Covalent)

HHL.1: 20 residues within 4Å: Chain A: L.29, V.37, R.39, T.55, A.57, K.59, E.76, M.80, I.90, V.104, V.106, E.107, C.108, A.109, A.110, G.112, L.175, A.185, D.186, F.187 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.39, A:T.55, A:V.106, A:V.106 Hydrogen bonds: A:R.39, A:A.109, A:A.109, A:A.109, A:D.186, A:D.186

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.172, T.202, N.204, R.206 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.202, A:T.202, A:N.204, A:N.204, A:R.206 Water bridges: A:N.113 Salt bridges: A:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, W. et al., Investigation of Covalent Warheads in the Design of 2-Aminopyrimidine-based FGFR4 Inhibitors. Acs Med.Chem.Lett. (2021)

Release Date

2021-04-14

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4