SMTL ID : 7duf.1

Crystal structure of VIM1 PHD finger.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.34, C.37, C.61, C.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.34, A:C.37, A:C.61, A:C.64 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, H.42, C.45 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:H.42, A:C.45 ZN.3: 5 residues within 4Å: Chain B: C.34, T.36, C.37, C.61, C.64 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.34, B:C.37, B:C.61, B:C.64 ZN.4: 4 residues within 4Å: Chain B: C.19, C.22, H.42, C.45 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.19, B:C.22, B:H.42, B:C.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abhishek, S. et al., Helical and beta-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition. Biochemistry (2021)

Release Date

2021-08-25

Peptides

E3 ubiquitin-protein ligase ORTHRUS 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase ORTHRUS 2