SMTL ID : 7dy7.1

Discovery of Novel Small-molecule Inhibitors of PD-1/PD-L1 Axis that Promotes PD-L1 Internalization and Degradation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

1 x HOU: 2-[[3-[[5-(2-methyl-3-phenyl-phenyl)-1,3,4-oxadiazol-2-yl]amino]phenyl]methylamino]ethanol(Non-covalent)

HOU.1: 21 residues within 4Å: Chain A: I.37, Y.39, N.46, Q.49, V.59, M.98, I.99, S.100, A.104, D.105, Y.106 Chain B: I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106, K.107, R.108 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.37, A:Y.39, A:Y.39, A:Q.49, A:V.59, A:M.98, A:A.104, B:A.104 Hydrogen bonds: A:N.46, A:Q.49, B:Y.106 pi-Stacking: B:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Discovery of Small-Molecule Inhibitors of the PD-1/PD-L1 Axis That Promote PD-L1 Internalization and Degradation. J.Med.Chem. (2022)

Release Date

2022-01-26

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Programmed cell death 1 ligand 1

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