SMTL ID : 7dyg.1

Histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 2-(1H-pyrazol-3-yl)isonicotinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0WS: 2-(1H-pyrazol-3-yl)pyridine-4-carboxylic acid(Non-covalent)

0WS.1: 13 residues within 4Å: Chain A: Y.126, D.129, Y.171, F.179, H.182, E.184, N.192, K.200, W.202, K.235, H.270, A.280 Ligands: FE.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.179, A:W.202 Hydrogen bonds: A:Y.126, A:E.184, A:N.192, A:K.235 Water bridges: A:N.284, A:N.284, A:N.284 Salt bridges: A:K.200

1 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: H.182, E.184, S.190, H.270 Ligands: 0WS.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.182, A:E.184, A:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 2-(1H-pyrazol-3-yl)isonicotinic acid. To Be Published

Release Date

2022-01-26

Peptides

Lysine-specific demethylase 4D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4D

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