SMTL ID : 7dyq.1

Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HR0: 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile(Non-covalent)

HR0.1: 17 residues within 4Å: Chain A: Y.171, F.179, H.182, E.184, S.190, N.192, K.200, T.201, W.202, Y.203, H.270, A.271, G.272, F.273, A.280, A.282 Ligands: FE.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.179, A:W.202, A:A.282 Hydrogen bonds: A:N.192, A:K.200 Water bridges: A:S.190 pi-Stacking: A:Y.171, A:F.179, A:F.179, A:W.202

1 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: H.182, E.184, H.270 Ligands: HR0.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.182, A:E.184, A:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile. To Be Published

Release Date

2022-01-26

Peptides

Lysine-specific demethylase 4D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4D

Related Entries With Identical Sequence