SMTL ID : 7e0d.1

Structure of L-glutamate oxidase R305E mutant in complex with L-arginine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: V.50, G.51, A.52, G.53, I.54, A.55, L.73, E.74, A.75, N.76, G.81, G.82, R.83, I.84, G.107, A.108, M.109, R.110, Q.338, R.339, M.340, T.390, I.391, S.395, K.423, Y.548, W.594, Y.599, E.603, G.630, E.631, A.638, W.639, I.640, A.643 Ligands: ARG.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:W.594, A:E.603 Hydrogen bonds: A:A.52, A:G.53, A:I.54, A:A.55, A:A.75, A:N.76, A:G.81, A:R.83, A:A.108, A:M.109, A:R.110, A:R.110, A:M.340, A:M.340, A:S.395, A:E.631, A:I.640 Water bridges: A:G.56, A:E.74, A:N.76, A:R.83, A:I.84, A:H.632 Salt bridges: A:R.83, A:R.83 FAD.3: 36 residues within 4Å: Chain B: V.50, G.51, A.52, G.53, I.54, A.55, L.73, E.74, A.75, N.76, G.81, G.82, R.83, I.84, G.107, A.108, M.109, R.110, Q.338, R.339, M.340, T.390, I.391, S.395, K.423, Y.548, W.594, Y.599, E.603, G.630, E.631, A.638, W.639, I.640, A.643 Ligands: ARG.4 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:W.594, B:E.603 Hydrogen bonds: B:A.52, B:G.53, B:I.54, B:A.55, B:A.75, B:N.76, B:G.81, B:R.83, B:A.108, B:M.109, B:R.110, B:R.110, B:M.340, B:M.340, B:S.395, B:E.631, B:I.640 Water bridges: B:G.56, B:E.74, B:N.76, B:R.83, B:R.83, B:I.84, B:T.390 Salt bridges: B:R.83, B:R.83

2 x ARG: ARGININE(Non-covalent)

ARG.2: 10 residues within 4Å: Chain A: R.110, E.291, H.298, D.419, Y.548, W.550, E.603, A.638, W.639 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:W.550 Hydrogen bonds: A:Y.548, A:Y.548, A:A.638 Salt bridges: A:R.110, A:E.291, A:D.419, A:E.603 pi-Cation interactions: A:W.550 ARG.4: 10 residues within 4Å: Chain B: R.110, E.291, H.298, D.419, Y.548, W.550, E.603, A.638, W.639 Ligands: FAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.550 Hydrogen bonds: B:Y.548, B:A.638 Salt bridges: B:R.110, B:E.291, B:D.419, B:E.603 pi-Cation interactions: B:W.550

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yano, Y. et al., A new l-arginine oxidase engineered from l-glutamate oxidase. Protein Sci. (2021)

Release Date

2021-04-07

Peptides

L-glutamate oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

L-glutamate oxidase

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