SMTL ID : 7e17.1

Structure of dimeric uPAR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.52, N.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54 NAG.2: 3 residues within 4Å: Chain A: P.156, N.174 Ligands: NAG.5 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: N.202, H.205, Q.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.202 NAG.4: 1 residues within 4Å: Chain B: N.54 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain B: N.174, T.175 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.175 NAG.6: 4 residues within 4Å: Chain B: N.202, T.204, H.205, Q.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, S. et al., Crystal structure and cellular functions of uPAR dimer. Nat Commun (2022)

Release Date

2021-12-22

Peptides

Urokinase plasminogen activator surface receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Urokinase plasminogen activator surface receptor

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