SMTL ID : 7e2e.1

Crystal structure of the Estrogen-Related Receptor alpha (ERRalpha) ligand-binding domain (LBD) in complex with an agonist DS45500853 and a PGC-1alpha peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-mer

Ligands

2 x HVO: 1-[4-(3-tert-butyl-4-oxidanyl-phenoxy)phenyl]ethanone(Non-covalent)

HVO.1: 11 residues within 4Å: Chain A: C.51, F.54, L.91, V.95, F.108, L.124, L.131, V.217, F.221, V.230, M.232 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.54, A:F.54, A:F.54, A:L.91, A:L.124, A:L.131, A:V.217, A:F.221, A:F.221, A:V.230 pi-Stacking: A:F.54, A:F.108 HVO.3: 12 residues within 4Å: Chain C: C.51, F.54, L.91, V.95, F.108, L.124, L.131, V.217, F.221, V.230, M.232, F.236 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.54, C:F.54, C:L.91, C:L.131, C:V.217, C:F.221, C:V.230 pi-Stacking: C:F.54, C:F.108

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: M.80 Chain B: P.2, A.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shinozuka, T. et al., Discovery of a Novel Class of ERR alpha Agonists. Acs Med.Chem.Lett. (2021)

Release Date

2021-06-30

Peptides

Steroid hormone receptor ERR1: AC
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
P

D
Q

Steroid hormone receptor ERR1

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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