SMTL ID : 7e3l.1

Ultrapotent SARS-CoV-2 neutralizing antibodies with protective efficacy against newly emerged mutational variants

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

20 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.122, T.124, K.129 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.234 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: N.280, E.281, N.282 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.603 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: N.616, T.618 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: N.709, G.1131 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain B: Y.28, N.61 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain B: N.122, T.124, K.129 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain B: N.234, T.236 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain B: E.281, N.282 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain B: N.603 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain B: N.616, T.618 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain B: N.709, I.1130, G.1131 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain C: Y.28, N.61 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain C: N.122, T.124, V.127 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain C: N.234 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain C: E.281, N.282 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain C: N.603 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain C: N.616, T.618 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain C: N.709, I.1130 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Potent SARS-CoV-2 neutralizing antibodies with protective efficacy against newly emerged mutational variants. Nat Commun (2021)

Release Date

2021-09-15

Peptides

Spike glycoprotein: ABC
58G6 heavy chain: DFH
58G6 light chain: EGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

F
F

H
D

E
L

G
G

I
E

Spike glycoprotein

58G6 heavy chain

58G6 light chain

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