- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 6 residues within 4Å:- Chain A: N.338, L.339, V.342, P.344, T.375, A.376
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.339, A:T.375, A:T.375, A:A.376
EDO.12: 6 residues within 4Å:- Chain A: H.307, A.310, A.311, E.329, E.330, R.331
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.331, A:R.331
EDO.13: 4 residues within 4Å:- Chain A: E.149, Y.326, G.327, L.372
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.327
EDO.26: 6 residues within 4Å:- Chain B: N.338, L.339, V.342, P.344, T.375, A.376
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.339, B:T.375, B:T.375, B:A.376
EDO.27: 6 residues within 4Å:- Chain B: H.307, A.310, A.311, E.329, E.330, R.331
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.331, B:R.331
EDO.28: 4 residues within 4Å:- Chain B: E.149, Y.326, G.327, L.372
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.327
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.14: 7 residues within 4Å:- Chain A: H.56, R.57, E.255, D.258, K.268, E.269, W.272
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.268
- Water bridges: A:E.255
PG4.29: 7 residues within 4Å:- Chain B: H.56, R.57, E.255, D.258, K.268, E.269, W.272
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.258, B:K.268
- Water bridges: B:E.255
- 2 x 7TS: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate(Non-covalent)
7TS.15: 19 residues within 4Å:- Chain A: A.31, A.32, T.95, T.96, H.124, A.126, V.174, N.176, D.201, A.203, S.224, H.226, K.227, R.359, R.379
- Chain B: N.54, R.57, G.277, T.278
19 PLIP interactions:15 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:A.203
- Hydrogen bonds: A:T.95, A:T.96, A:T.96, A:H.124, A:N.176, A:S.224, A:S.224, A:K.227, A:R.359, A:R.379, A:R.379, B:T.278, B:T.278, B:T.278
- Water bridges: A:T.97, B:E.255
- Salt bridges: A:H.226
- pi-Stacking: A:H.124
7TS.30: 19 residues within 4Å:- Chain A: N.54, R.57, G.277, T.278
- Chain B: A.31, A.32, T.95, T.96, H.124, A.126, V.174, N.176, D.201, A.203, S.224, H.226, K.227, R.359, R.379
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:A.203
- Hydrogen bonds: B:T.95, B:T.96, B:T.96, B:H.124, B:N.176, B:S.224, B:S.224, B:K.227, B:R.359, B:R.379, B:R.379, A:T.278, A:T.278
- Water bridges: B:T.97
- Salt bridges: B:H.226
- pi-Stacking: B:H.124
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, R. et al., Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Cysteine desulfurase SufS: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x 7TS: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, R. et al., Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Cysteine desulfurase SufS: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A