SMTL ID : 7e72.2 (1 other biounit)

Crystal structure of Tie2-agonistic antibody in complex with human Tie2 Fn2-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-1-mer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: N.35, V.37, W.47, A.97, Y.101, G.102, W.105 Chain B: N.34, L.89 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.47, A:Y.101, B:N.34 EDO.2: 7 residues within 4Å: Chain A: G.8, V.93, Y.95, Q.107, G.108, L.110 Chain B: D.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.8, A:L.110 EDO.3: 3 residues within 4Å: Chain A: S.205, N.206, T.207 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: V.165, H.166, T.167 Chain B: T.164, E.165, D.167 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.165, B:E.165, B:D.167, A:T.167 Water bridges: B:S.168, A:V.165 EDO.5: 5 residues within 4Å: Chain A: K.38, K.63, F.64, K.67, E.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.63 Water bridges: A:K.38 EDO.6: 8 residues within 4Å: Chain A: T.112, V.113, S.114, A.116, F.148, L.172, G.176, Y.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.178 Water bridges: A:S.114, A:A.115 EDO.7: 6 residues within 4Å: Chain B: F.83, K.103, L.104, E.105, I.106, Q.166 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.103, B:K.103, B:I.106 Water bridges: B:Q.166, B:S.168, B:Y.173 EDO.8: 5 residues within 4Å: Chain A: K.145, Q.173, S.174 Chain B: Q.160, T.180 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.160, B:T.180, A:S.174 Water bridges: A:Q.173 EDO.9: 8 residues within 4Å: Chain B: Q.37, K.45, L.47, P.59, R.61, F.62, E.81, D.82 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.37, B:K.45, B:K.45, B:R.61, B:D.82 EDO.10: 7 residues within 4Å: Chain B: A.111, A.112, P.113, S.114, N.137, N.138, F.139 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.114, B:N.138 EDO.11: 6 residues within 4Å: Chain B: E.143, A.144, K.145, T.197, H.198, Q.199 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.145 Water bridges: B:Q.199 EDO.12: 7 residues within 4Å: Chain C: Y.138, V.149, V.151, Y.161, Q.162, L.163, K.164 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.138, C:Y.138, C:Y.161, C:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jo, G. et al., Structural insights into the clustering and activation of Tie2 receptor mediated by Tie2 agonistic antibody. Nat Commun (2021)

Release Date

2021-11-10

Peptides

the chimeric Fab fragment of 3H7 (heavy chain): A
the chimeric Fab fragment of 3H7 (light chain): B
Angiopoietin-1 receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

the chimeric Fab fragment of 3H7 (heavy chain)

the chimeric Fab fragment of 3H7 (light chain)

Angiopoietin-1 receptor

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