SMTL ID : 7e8k.1 (1 other biounit)

Crystal structure of Proteinaceous RNase P (PRORP) from Planctomycetes bacterium GWF2_40_8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.39, R.40, T.44, N.48 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.40, A:T.44, A:N.48 Salt bridges: A:R.40 SO4.2: 3 residues within 4Å: Chain A: I.80, P.81, K.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.80, A:K.82 SO4.3: 4 residues within 4Å: Chain A: I.36, L.37, R.40 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.48 Salt bridges: A:R.40 SO4.4: 4 residues within 4Å: Chain B: G.39, R.40, T.44, N.48 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.40, B:N.48 SO4.5: 2 residues within 4Å: Chain B: R.7, R.191 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.191 Salt bridges: B:R.7, B:R.191 SO4.6: 3 residues within 4Å: Chain B: H.114, K.118, R.121 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.114, B:R.121 SO4.7: 2 residues within 4Å: Chain B: R.196, N.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.197, B:N.197 Salt bridges: B:R.196 SO4.8: 2 residues within 4Å: Chain B: P.81, K.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.82 SO4.9: 2 residues within 4Å: Chain B: N.141, K.145 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structures and insights into precursor tRNA 5'-end processing by prokaryotic minimal protein-only RNase P. Nat Commun (2022)

Release Date

2022-03-02

Peptides

RNA-free ribonuclease P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-free ribonuclease P

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