SMTL ID : 7e8n.1

Crystal structure of Type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: H.234, N.237, H.269, G.270, H.311, R.320, D.369, F.390, R.394 Chain C: R.414 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:N.237, A:F.390 Hydrogen bonds: A:H.234, A:N.237, A:H.311, A:R.320, A:R.320 Water bridges: A:D.369 Salt bridges: A:H.234, A:H.234, A:H.269, A:H.269, A:H.311, A:R.320, A:R.394, C:R.414 CIT.2: 8 residues within 4Å: Chain B: H.234, N.237, H.269, H.311, R.320, D.369, R.394 Chain E: R.414 10 PLIP interactions: 1 interactions with chain E, 9 interactions with chain B Salt bridges: E:R.414, B:H.234, B:H.234, B:H.269, B:H.269, B:H.311, B:R.320, B:R.394 Hydrogen bonds: B:H.311, B:R.320 CIT.3: 12 residues within 4Å: Chain A: R.414 Chain C: H.234, N.237, H.269, G.270, G.271, H.311, R.312, R.320, D.369, F.390, R.394 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:H.269, C:H.311 Salt bridges: C:H.234, C:H.269, C:H.311, C:H.311, C:R.312, C:R.320, C:R.394, C:R.394, A:R.414 CIT.4: 10 residues within 4Å: Chain D: H.234, N.237, H.269, G.270, H.311, R.320, D.369, F.390, R.394 Chain F: R.414 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: D:N.237, D:F.390 Hydrogen bonds: D:N.237, D:H.311, D:R.320, D:R.320 Salt bridges: D:H.234, D:H.234, D:H.269, D:H.269, D:H.311, D:R.320, D:R.394, F:R.414 CIT.5: 8 residues within 4Å: Chain B: R.414 Chain E: H.234, N.237, H.269, H.311, R.320, D.369, R.394 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:H.234, E:H.311, E:R.320 Salt bridges: E:H.234, E:H.234, E:H.269, E:H.269, E:H.311, E:R.320, E:R.394, B:R.414 CIT.6: 12 residues within 4Å: Chain D: R.414 Chain F: H.234, N.237, H.269, G.270, G.271, H.311, R.312, R.320, D.369, F.390, R.394 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:H.269, F:H.311 Salt bridges: F:H.234, F:H.269, F:H.311, F:H.311, F:R.312, F:R.320, F:R.394, F:R.394, D:R.414

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.H. et al., Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554. Int.J.Biol.Macromol. (2021)

Release Date

2022-01-12

Peptides

Citrate synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Citrate synthase