SMTL ID : 7ea2.1

crystal structure of NAP1 FIR in complex with RB1CC1 Claw domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 8 residues within 4Å: Chain A: L.38, F.51, T.52, S.54, W.84 Chain B: L.38, F.51, W.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54, A:W.84 Water bridges: A:T.52

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain B: T.52, V.53, S.54 No protein-ligand interaction detected (PLIP) PEG.4: 4 residues within 4Å: Chain B: H.22, S.23, K.25, K.123 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.25, B:K.123, A:D.35 Water bridges: A:G.34, A:D.35

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 5 residues within 4Å: Chain A: Q.32, K.92 Chain B: E.14, S.19, R.21 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:Q.32 Water bridges: A:K.92, B:N.12, B:N.12, B:S.19, B:S.19 Salt bridges: A:K.92, A:K.92, B:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, T. et al., Structural and biochemical advances on the recruitment of the autophagy-initiating ULK and TBK1 complexes by autophagy receptor NDP52. Sci Adv (2021)

Release Date

2021-12-22

Peptides

5-azacytidine-induced protein 2,RB1-inducible coiled-coil protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

5-azacytidine-induced protein 2,RB1-inducible coiled-coil protein 1