SMTL ID : 7ea4.2 (1 other biounit)

Crystal Structure of L182E D-Succinylase (DSA) from Cupriavidus sp. P4-10-C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 11 residues within 4Å: Chain A: S.282, P.303, H.304, R.305, R.313, L.348, T.349, R.350, Y.433, E.460, N.523 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.348, A:R.350 Hydrogen bonds: A:S.282, A:H.304, A:H.304, A:R.350, A:Y.433, A:N.523 Salt bridges: A:R.305, A:R.313 SIN.2: 7 residues within 4Å: Chain A: Q.83, H.307, G.308, A.309, P.310, L.312, P.715 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.307 Water bridges: A:A.309, A:A.309 SIN.3: 7 residues within 4Å: Chain A: R.482, P.483, W.485, D.486, K.535, L.536, G.537 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.482, A:W.485 Water bridges: A:R.482, A:Y.540

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: N.185, E.189, D.354, E.356, D.357, G.487 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.189, A:D.354, A:E.356, A:D.357, A:G.487

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: W.485, D.486, G.487, L.488, F.489 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumida, Y. et al., Protein Engineering of d-Succinylase from Cupriavidus sp. for d-Amino Acid Synthesis and the Structural Implications. Adv.Synth.Catal. (2021)

Release Date

2022-01-26

Peptides

D-succinylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D-succinylase

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