SMTL ID : 7eam.2 (1 other biounit)

immune complex of SARS-CoV-2 RBD and cross-neutralizing antibody 7D6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.13, C.43, C.73, T.205, C.207 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: F.20, G.21, N.25, V.49, L.50 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.20, A:L.50 Hydrogen bonds: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Cross-neutralizing antibodies bind a SARS-CoV-2 cryptic site and resist circulating variants. Nat Commun (2021)

Release Date

2021-03-17

Peptides

Spike protein S1: A
the heavy chain of Fab fragment of antibody 7D6: B
the light chain of Fab fragment of antibody 7D6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

Spike protein S1

the heavy chain of Fab fragment of antibody 7D6

the light chain of Fab fragment of antibody 7D6

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