SMTL ID : 7eba.1

Co-crystal of kurarinone with sEH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x J0U: (2S)-2-[2,4-bis(oxidanyl)phenyl]-5-methoxy-8-[(2R)-5-methyl-2-prop-1-en-2-yl-hex-4-enyl]-7-oxidanyl-2,3-dihydrochromen-4-one(Non-covalent)

J0U.1: 18 residues within 4Å: Chain A: D.112, W.113, M.116, Y.120, T.137, P.138, I.140, P.141, A.142, I.152, F.158, Q.161, Y.243, M.246, N.249, A.253, L.276, M.280 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.138, A:I.152, A:F.158, A:Y.243, A:N.249 Hydrogen bonds: A:Y.120, A:P.141, A:Q.161, A:N.249 J0U.2: 16 residues within 4Å: Chain B: D.112, W.113, M.116, Y.120, T.137, I.140, P.141, A.142, I.152, F.158, Q.161, Y.243, M.246, N.249, L.276, M.280 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.137, B:I.140, B:I.152, B:F.158, B:N.249 Hydrogen bonds: B:P.141, B:Q.161, B:N.249 Water bridges: B:A.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, C.P. et al., Kurarinone alleviated Parkinson's disease via stabilization of epoxyeicosatrienoic acids in animal model. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-03-09

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional epoxide hydrolase 2