SMTL ID : 7ec6.1

Crystal structure of SdgB (complexed with peptides)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x ASP- SER- ASP: ASP-SER-ASP(Non-covalent)

ASP-SER-ASP.1: 10 residues within 4Å: Chain A: R.102, F.109, Y.112, Y.125, N.127, F.129, R.133, K.135, R.138, Q.157 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.112, A:F.129 Hydrogen bonds: A:Y.125, A:Y.125, A:N.127, A:N.127, A:K.135, A:Q.157 Salt bridges: A:R.102, A:R.133, A:K.135, A:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D.G. et al., Structural basis for SdgB- and SdgA-mediated glycosylation of staphylococcal adhesive proteins. Acta Crystallogr D Struct Biol (2021)

Release Date

2022-03-16

Peptides

Glycosyl transferase, group 1 family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Glycosyl transferase, group 1 family protein

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