SMTL ID : 7ed2.1

Transferase from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 17 residues within 4Å: Chain A: R.43, R.51, K.70, K.73, G.74, E.75, P.76, L.86, T.87, H.88, D.109, E.151, Y.154, K.155, Y.158 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.73, A:T.87, A:H.88, A:K.155 Water bridges: A:K.70, A:H.88, A:H.88, A:A.110, A:A.110 Salt bridges: A:R.43, A:R.51, A:K.70, A:H.88, A:H.88, A:K.155 A3P.4: 18 residues within 4Å: Chain B: R.43, V.50, R.51, K.70, K.73, G.74, E.75, P.76, L.86, T.87, H.88, D.109, E.151, Y.154, K.155, Y.158 Ligands: MG.5, MG.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:K.73, B:T.87, B:H.88, B:Y.154, B:K.155 Water bridges: B:K.70, B:H.88, B:H.88, B:D.109, B:E.111 Salt bridges: B:R.43, B:R.51, B:K.70, B:H.88, B:H.88, B:K.155

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.87, D.109, E.151 Ligands: A3P.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.109, A:E.151, H2O.1, H2O.1, H2O.1 MG.3: 2 residues within 4Å: Chain A: H.88 Ligands: A3P.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.88, A:H.88, H2O.1, H2O.2, H2O.2 MG.5: 5 residues within 4Å: Chain B: T.87, D.109, E.111, E.151 Ligands: A3P.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.109, B:E.151, H2O.4, H2O.4, H2O.5 MG.6: 2 residues within 4Å: Chain B: H.88 Ligands: A3P.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.88, B:H.88, H2O.4, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D.-G. et al., Transferase from Mycobacterium tuberculosis. To Be Published

Release Date

2022-03-16

Peptides

4'-phosphopantetheinyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4'-phosphopantetheinyl transferase