SMTL ID : 7ed9.2 (1 other biounit)

Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 24 residues within 4Å: Chain A: N.53, Y.55, P.56, V.57, D.59, D.61, T.62, N.65, G.102, N.103, S.104, I.107, V.145, R.147, P.148, V.149, T.152, I.153, L.154, D.201, A.202, G.203 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.53, A:Y.55, A:N.65, A:N.103, A:N.103, A:S.104, A:R.147, A:V.149, A:I.153, A:D.201, A:A.202, A:G.203, A:G.204 Water bridges: A:V.57, A:D.59

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: N.53, D.59, D.61 Ligands: ADP.1, MG.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.59, A:D.61, H2O.1 MG.3: 4 residues within 4Å: Chain A: D.59, D.61 Ligands: ADP.1, MG.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:D.61, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatani, M. et al., Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8. J.Struct.Biol. (2022)

Release Date

2022-03-16

Peptides

Probable kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable kinase

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