- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- hetero-5-1-1-mer
- Ligands
- 10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 16 x ACN: ACETONE(Non-covalent)
ACN.2: 5 residues within 4Å:- Chain A: L.17, S.18, Y.19, L.65
- Chain B: T.67
Ligand excluded by PLIPACN.3: 6 residues within 4Å:- Chain A: N.15, K.37, G.39, S.40, E.41, A.42
Ligand excluded by PLIPACN.6: 7 residues within 4Å:- Chain B: S.24, Y.54, W.87, R.88, D.89, F.92
- Ligands: PEG.5
Ligand excluded by PLIPACN.7: 5 residues within 4Å:- Chain B: K.37, G.39, S.40, E.41, A.42
Ligand excluded by PLIPACN.8: 4 residues within 4Å:- Chain B: H.38, G.39, S.40, E.41
Ligand excluded by PLIPACN.9: 4 residues within 4Å:- Chain A: Y.72
- Chain B: G.76, D.77, C.107
Ligand excluded by PLIPACN.12: 7 residues within 4Å:- Chain C: S.24, Y.54, W.87, R.88, D.89, F.92
- Ligands: GOL.13
Ligand excluded by PLIPACN.18: 6 residues within 4Å:- Chain A: T.67
- Chain D: L.17, S.18, Y.19, L.65, K.69
Ligand excluded by PLIPACN.19: 4 residues within 4Å:- Chain D: G.55, N.56, R.88
- Ligands: PEG.15
Ligand excluded by PLIPACN.22: 4 residues within 4Å:- Chain E: E.84, K.93, S.98, R.99
Ligand excluded by PLIPACN.32: 5 residues within 4Å:- Chain A: T.74
- Chain G: G.183, Y.212, V.217
- Ligands: ACN.33
Ligand excluded by PLIPACN.33: 5 residues within 4Å:- Chain D: Y.72
- Chain G: R.62, G.183, P.184
- Ligands: ACN.32
Ligand excluded by PLIPACN.34: 8 residues within 4Å:- Chain F: D.4, Y.5, Q.106
- Chain G: R.27, R.46, T.119, L.120, F.167
Ligand excluded by PLIPACN.35: 6 residues within 4Å:- Chain G: Y.94, V.164, I.165, P.166, F.167, L.168
Ligand excluded by PLIPACN.36: 3 residues within 4Å:- Chain G: R.111, L.112, R.114
Ligand excluded by PLIPACN.37: 3 residues within 4Å:- Chain G: R.67, S.68, T.69
Ligand excluded by PLIP- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: Y.22, T.23, S.24, G.25, G.26, D.89
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.25, A:G.26, A:D.89
- Water bridges: A:Y.22
GOL.10: 7 residues within 4Å:- Chain B: N.15, N.16, G.35, L.36, N.46
- Chain E: Y.112, M.114
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:N.15, B:N.15, B:N.16
- Water bridges: E:Y.112
GOL.11: 3 residues within 4Å:- Chain B: D.6, T.7, Y.8
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.8, B:Y.8
- Water bridges: B:Y.8, B:Y.82, B:Y.82
GOL.13: 5 residues within 4Å:- Chain C: Y.54, G.55, V.86, R.88
- Ligands: ACN.12
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.55, C:R.88
GOL.14: 7 residues within 4Å:- Chain C: N.15, N.16, G.35, L.36, N.46
- Chain D: Y.112, M.114
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:N.15, C:N.16, C:G.35, D:Y.112
GOL.23: 5 residues within 4Å:- Chain E: Y.54, G.55, N.56, V.86, R.88
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.55, E:R.88
GOL.24: 7 residues within 4Å:- Chain C: Y.112, M.114
- Chain E: N.15, N.16, G.35, L.36, N.46
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain E- Hydrogen bonds: C:Y.112, E:N.15, E:N.15, E:N.16
- Water bridges: C:Y.112, C:G.115
GOL.27: 6 residues within 4Å:- Chain F: K.6, A.35
- Chain G: Y.25, N.26, D.44
- Ligands: FLC.25
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:D.44, F:K.6
- Water bridges: G:Y.25
GOL.28: 8 residues within 4Å:- Chain F: R.164, H.165, L.166, R.218, P.220
- Chain G: L.123, P.124, E.125
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain G- Hydrogen bonds: F:H.165, F:R.218, G:E.125
- 2 x FLC: CITRATE ANION(Non-covalent)
FLC.25: 9 residues within 4Å:- Chain F: T.34, A.35
- Chain G: Y.25, N.26, R.27, N.28, P.169, Q.172
- Ligands: GOL.27
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:P.169
- Hydrogen bonds: G:N.26, G:N.26, G:R.27, G:N.28
- Water bridges: G:N.26, G:Q.31
FLC.29: 7 residues within 4Å:- Chain D: S.109, S.110
- Chain G: S.52, S.53, V.54, N.55, R.114
9 PLIP interactions:8 interactions with chain G, 1 interactions with chain D- Hydrogen bonds: G:S.53, G:S.53, G:V.54, G:N.55, G:R.114, D:S.110
- Water bridges: G:N.55, G:N.55
- Salt bridges: G:R.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, X. et al., Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin. Mbio (2022)
- Release Date
- 2021-12-22
- Peptides
- Subtilase cytotoxin subunit B-like protein: ABCDE
Cytolethal distending toxin subunit B family protein: F
Pertussis-like toxin subunit ArtA: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- hetero-5-1-1-mer
- Ligands
- 10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 16 x ACN: ACETONE(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, X. et al., Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin. Mbio (2022)
- Release Date
- 2021-12-22
- Peptides
- Subtilase cytotoxin subunit B-like protein: ABCDE
Cytolethal distending toxin subunit B family protein: F
Pertussis-like toxin subunit ArtA: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G