SMTL ID : 7ef9.1

Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: R.177, V.178, V.221, C.222, C.229, C.232, V.234, Q.235, C.238, Y.241, V.284 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.222, A:C.229, A:C.232, A:C.238

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.17, C.261 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.17, A:C.261

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: S.55, R.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.55 Water bridges: A:S.55, A:S.55 Salt bridges: A:R.135 SO4.5: 4 residues within 4Å: Chain A: R.243, N.264, S.276, P.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.264, A:S.276 Salt bridges: A:R.243 SO4.6: 3 residues within 4Å: Chain A: Q.346, H.347, K.348 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.346, A:H.347, A:K.348 SO4.7: 2 residues within 4Å: Chain A: R.57, K.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.92 Salt bridges: A:R.57, A:K.90 SO4.8: 3 residues within 4Å: Chain A: C.411, F.423, E.427 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.408 SO4.9: 4 residues within 4Å: Chain A: G.313, G.314, W.407, E.408 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.313, A:W.407

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: V.320, Q.321, R.322, E.333, P.335, S.336, E.353, R.356, W.357 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.321, A:S.336, A:S.336, A:E.353, A:R.356, A:R.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer. Nucleic Acids Res. (2021)

Release Date

2021-06-23

Peptides

Adenine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenine DNA glycosylase