SMTL ID : 7efp.1

Structure of SARS-CoV-2 spike receptor-binding domain in complex with high affinity ACE2 mutant (S19W,N330Y)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.37, T.39, E.41, N.42, Q.324 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.324 Hydrogen bonds: A:N.37, A:T.39, A:E.41, A:N.42 NAG.2: 6 residues within 4Å: Chain A: K.10, Q.73, N.74, L.75, T.76, V.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.75 NAG.3: 5 residues within 4Å: Chain A: K.58, T.62, Q.65, N.87, H.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.87 NAG.4: 2 residues within 4Å: Chain A: S.404, N.530 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.404 NAG.5: 5 residues within 4Å: Chain B: G.20, F.23, N.24, L.49, S.52 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.23, B:L.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, F. et al., S19W, T27W, and N330Y mutations in ACE2 enhance SARS-CoV-2 S-RBD binding toward both wild-type and antibody-resistant viruses and its molecular basis. Signal Transduct Target Ther (2021)

Release Date

2021-11-24

Peptides

Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike glycoprotein

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