SMTL ID : 7efr.1

Structure of SARS-CoV-2 spike receptor-binding domain in complex with high affinity ACE2 mutant (T27W,N330Y)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.37, T.39, E.41, N.42, Q.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.41, A:N.42 NAG.2: 2 residues within 4Å: Chain A: K.10, N.74 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.10 Hydrogen bonds: A:K.10 NAG.3: 5 residues within 4Å: Chain A: K.58, T.62, Q.65, Q.85, N.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.65, A:N.87, A:N.87, A:N.87 NAG.4: 2 residues within 4Å: Chain A: S.404, N.530 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.404, A:S.404 NAG.5: 4 residues within 4Å: Chain B: G.19, N.23, L.48, S.51 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.48 Hydrogen bonds: B:S.51, B:S.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, F. et al., S19W, T27W, and N330Y mutations in ACE2 enhance SARS-CoV-2 S-RBD binding toward both wild-type and antibody-resistant viruses and its molecular basis. Signal Transduct Target Ther (2021)

Release Date

2021-11-24

Peptides

Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike glycoprotein