SMTL ID : 7efv.1

Crystal structure of octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-8-8-mer

Ligands

24 x CYC: PHYCOCYANOBILIN(Covalent)

CYC.1: 27 residues within 4Å: Chain A: V.59, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, L.115, I.118, F.122, L.124, W.128, Y.129 Chain N: R.57, F.60, I.67, Y.74, N.76, M.79 Ligand excluded by PLIP CYC.2: 18 residues within 4Å: Chain B: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, L.113, T.116, Y.117, V.122, P.123, S.126, V.127 Ligand excluded by PLIP CYC.3: 17 residues within 4Å: Chain A: L.24, N.28 Chain B: S.35, K.36, L.38, D.39, N.42, V.142, N.143, D.144, I.148, T.149, K.150, G.151, C.153 Chain C: R.33, Q.145 Ligand excluded by PLIP CYC.4: 29 residues within 4Å: Chain C: V.59, Y.60, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, I.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129 Chain L: R.57, I.67, Y.74, N.76, M.79 Ligand excluded by PLIP CYC.5: 15 residues within 4Å: Chain D: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, L.113, L.120, V.122, S.126, V.127 Ligand excluded by PLIP CYC.6: 17 residues within 4Å: Chain A: R.33, Q.145 Chain C: N.21, L.24, N.28 Chain D: K.32, S.35, K.36, L.38, D.39, V.142, N.143, I.148, T.149, K.150, G.151, C.153 Ligand excluded by PLIP CYC.7: 27 residues within 4Å: Chain E: V.59, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, L.115, I.118, F.122, L.124, W.128, Y.129 Chain J: R.57, F.60, I.67, Y.74, N.76, M.79 Ligand excluded by PLIP CYC.8: 18 residues within 4Å: Chain F: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, L.113, T.116, Y.117, V.122, P.123, S.126, V.127 Ligand excluded by PLIP CYC.9: 17 residues within 4Å: Chain E: L.24, N.28 Chain F: S.35, K.36, L.38, D.39, N.42, V.142, N.143, D.144, I.148, T.149, K.150, G.151, C.153 Chain G: R.33, Q.145 Ligand excluded by PLIP CYC.10: 29 residues within 4Å: Chain G: V.59, Y.60, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, I.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129 Chain P: R.57, I.67, Y.74, N.76, M.79 Ligand excluded by PLIP CYC.11: 15 residues within 4Å: Chain H: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, L.113, L.120, V.122, S.126, V.127 Ligand excluded by PLIP CYC.12: 17 residues within 4Å: Chain E: R.33, Q.145 Chain G: N.21, L.24, N.28 Chain H: K.32, S.35, K.36, L.38, D.39, V.142, N.143, I.148, T.149, K.150, G.151, C.153 Ligand excluded by PLIP CYC.13: 27 residues within 4Å: Chain B: R.57, F.60, I.67, Y.74, N.76, M.79 Chain I: V.59, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, L.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.14: 18 residues within 4Å: Chain J: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, L.113, T.116, Y.117, V.122, P.123, S.126, V.127 Ligand excluded by PLIP CYC.15: 17 residues within 4Å: Chain I: L.24, N.28 Chain J: S.35, K.36, L.38, D.39, N.42, V.142, N.143, D.144, I.148, T.149, K.150, G.151, C.153 Chain K: R.33, Q.145 Ligand excluded by PLIP CYC.16: 29 residues within 4Å: Chain H: R.57, I.67, Y.74, N.76, M.79 Chain K: V.59, Y.60, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, I.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.17: 15 residues within 4Å: Chain L: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, L.113, L.120, V.122, S.126, V.127 Ligand excluded by PLIP CYC.18: 17 residues within 4Å: Chain I: R.33, Q.145 Chain K: N.21, L.24, N.28 Chain L: K.32, S.35, K.36, L.38, D.39, V.142, N.143, I.148, T.149, K.150, G.151, C.153 Ligand excluded by PLIP CYC.19: 27 residues within 4Å: Chain F: R.57, F.60, I.67, Y.74, N.76, M.79 Chain M: V.59, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, I.94, Y.110, L.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.20: 18 residues within 4Å: Chain N: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, R.108, L.113, T.116, Y.117, V.122, P.123, S.126, V.127 Ligand excluded by PLIP CYC.21: 17 residues within 4Å: Chain M: L.24, N.28 Chain N: S.35, K.36, L.38, D.39, N.42, V.142, N.143, D.144, I.148, T.149, K.150, G.151, C.153 Chain O: R.33, Q.145 Ligand excluded by PLIP CYC.22: 29 residues within 4Å: Chain D: R.57, I.67, Y.74, N.76, M.79 Chain O: V.59, Y.60, T.66, A.72, N.73, F.74, A.75, R.79, G.80, K.83, C.84, R.86, D.87, Y.90, Y.91, I.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129 Ligand excluded by PLIP CYC.23: 15 residues within 4Å: Chain P: L.66, N.72, A.73, R.78, A.81, C.82, D.85, M.86, I.88, Y.92, L.113, L.120, V.122, S.126, V.127 Ligand excluded by PLIP CYC.24: 17 residues within 4Å: Chain M: R.33, Q.145 Chain O: N.21, L.24, N.28 Chain P: K.32, S.35, K.36, L.38, D.39, V.142, N.143, I.148, T.149, K.150, G.151, C.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minato, T. et al., Non-conventional octameric structure of C-phycocyanin. Commun Biol (2021)

Release Date

2021-11-17

Peptides

C-phycocyanin alpha chain: ACEGIKMO
C-phycocyanin beta chain: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

M
A

O
C

B
B

D
D

F
B

H
D

J
B

L
D

N
B

P
D

C-phycocyanin alpha chain

C-phycocyanin beta chain

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