SMTL ID : 7ej9.1

Alternative crystal structure of mouse Cryptochrome 2 in complex with TH301 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DYX: 1-(4-chlorophenyl)-N-[2-(4-methoxyphenyl)-5,5-bis(oxidanylidene)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]cyclopentane-1-carboxamide(Non-covalent)

DYX.1: 17 residues within 4Å: Chain A: Q.309, W.312, R.313, F.316, H.375, R.378, H.379, A.382, F.401, D.407, A.408, V.412, N.413, S.416, W.417, W.419, L.420 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.312, A:W.312, A:W.312, A:F.316, A:R.378, A:F.401, A:A.408, A:V.412, A:W.419, A:W.419 Hydrogen bonds: A:Q.309, A:R.378, A:S.416, A:S.416 pi-Stacking: A:H.375 pi-Cation interactions: A:H.375 DYX.2: 17 residues within 4Å: Chain B: Q.309, W.312, R.313, F.316, H.375, R.378, H.379, A.382, F.401, D.407, A.408, V.412, N.413, S.416, W.417, W.419, L.420 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:W.312, B:W.312, B:W.312, B:F.316, B:R.378, B:F.401, B:A.408, B:V.412, B:W.419, B:W.419 Hydrogen bonds: B:Q.309, B:R.378, B:S.416, B:S.416 pi-Stacking: B:H.375 pi-Cation interactions: B:H.375, B:R.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S. et al., Structural differences in the FAD-binding pockets and lid loops of mammalian CRY1 and CRY2 for isoform-selective regulation. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-06-23

Peptides

Cryptochrome-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cryptochrome-2

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