SMTL ID : 7ejn.1

Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-HKU1) spike protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- TYR- VAL- LYS- TRP- PRO- TRP- TYR- VAL: 9-mer peptide from the HCoV spike protein(Non-covalent)

MET-TYR-VAL-LYS-TRP-PRO-TRP-TYR-VAL.1: 23 residues within 4Å: Chain A: M.12, Y.14, A.31, M.52, E.69, E.70, K.73, V.74, H.77, T.80, E.83, N.84, I.87, Y.91, F.106, T.150, K.153, W.154, Q.162, Q.163, Y.166, T.170, Y.178 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:K.73, A:K.73, A:V.74, A:T.80, A:E.83, A:N.84, A:I.87, A:I.87, A:F.106, A:T.170 Hydrogen bonds: A:Y.14, A:E.70, A:H.77, A:N.84, A:N.84, A:Y.91, A:Q.163, A:T.170, A:Y.178, A:Y.178 Water bridges: A:E.70 Salt bridges: A:K.153 pi-Stacking: A:Y.14, A:F.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, K. et al., Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2. Commun Biol (2021)

Release Date

2022-01-26

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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