SMTL ID : 7ejv.1

The co-crystal structure of DYRK2 with YK-2-69

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x YK2: [6-[[4-[2-(dimethylamino)-1,3-benzothiazol-6-yl]-5-fluoranyl-pyrimidin-2-yl]amino]pyridin-3-yl]-(4-ethylpiperazin-1-yl)methanone(Non-covalent)

YK2.1: 16 residues within 4Å: Chain A: I.78, F.83, V.86, A.99, I.135, F.151, E.152, L.153, L.154, S.155, M.156, N.157, E.160, L.205, I.217, D.218 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.86, A:I.217 Hydrogen bonds: A:L.154, A:L.154, A:N.157 YK2.2: 16 residues within 4Å: Chain B: I.76, F.81, V.84, A.97, K.99, I.133, F.149, E.150, L.151, L.152, S.153, M.154, N.155, E.158, L.203, D.216 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.76, B:V.84, B:V.84, B:L.203 Hydrogen bonds: B:K.99, B:L.152, B:L.152, B:N.155 Water bridges: B:D.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, K. et al., Targeting dual-specificity tyrosine phosphorylation-regulated kinase 2 with a highly selective inhibitor for the treatment of prostate cancer. Nat Commun (2022)

Release Date

2022-04-06

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 2: A
Dual specificity tyrosine-phosphorylation-regulated kinase 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dual specificity tyrosine-phosphorylation-regulated kinase 2

Dual specificity tyrosine-phosphorylation-regulated kinase 2