SMTL ID : 7elg.1

LC3B modificated with a covalent probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 8Z6: 2-methylidene-5-thiophen-2-yl-cyclohexane-1,3-dione(Covalent)

8Z6.1: 6 residues within 4Å: Chain A: K.34, K.53, F.56, L.57, P.59, R.74 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.53, A:P.59 Hydrogen bonds: A:L.57, A:R.74 pi-Cation interactions: A:K.34

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.12, F.17, R.20 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.12, A:K.12, A:R.20 Salt bridges: A:K.12, A:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., Inhibition of Autophagy by a Small Molecule through Covalent Modification of the LC3 Protein. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-10-13

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3B

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