SMTL ID : 7elh.1

In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.30 Å

Oligo State

hetero-1-1-10-5-mer

Ligands

1 x A- A- G- C: transcript RNA(Non-covalent)

A-A-G-C.1: 17 residues within 4Å: Chain B: T.457, R.459, G.460, G.461, S.462, A.488, K.490, S.514, M.515, R.518, I.528, P.530, S.682, G.683, S.684, T.685, N.807 Protein-ligand interaction information (PLIP) not available

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: K.415, G.416, K.419, D.444, S.445, D.446, H.529 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.416, A:S.445 Salt bridges: A:K.415, A:K.419, A:H.529

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, M. et al., Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun (2021)

Release Date

2021-10-20

Peptides

Minor core protein mu2: A
RNA-directed RNA polymerase: B
Lambda 1: CEFHIKLNOQ
Lambda 1: DGJMP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

E
E

F
F

H
G

I
H

K
I

L
J

N
K

O
L

Q
M

D
e

G
g

J
i

M
k

P
m

Minor core protein mu2

RNA-directed RNA polymerase

Lambda 1

Lambda 1