SMTL ID : 7ell.1

In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.80 Å

Oligo State

hetero-10-10-1-mer

Ligands

10 x MYR: MYRISTIC ACID(Covalent)(Non-covalent)

MYR.1: 6 residues within 4Å: Chain A: G.1, N.2 Chain B: D.178, I.187, P.191 Chain U: L.588 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain U Hydrophobic interactions: B:D.178, B:I.187, B:P.191, U:L.588 MYR.2: 6 residues within 4Å: Chain D: L.177, D.178, I.187, P.191, L.198, W.207 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.177, D:I.187, D:P.191, D:L.198, D:W.207 MYR.3: 3 residues within 4Å: Chain F: L.177, I.187, P.191 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.177, F:P.191 MYR.4: 4 residues within 4Å: Chain A: K.20 Chain B: E.165 Chain H: D.178, K.192 No protein-ligand interaction detected (PLIP) MYR.5: 8 residues within 4Å: Chain I: F.19 Chain J: V.174, D.178, I.187, P.191, L.198, I.205, W.207 7 PLIP interactions: 6 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:V.174, J:D.178, J:I.187, J:P.191, J:I.205, J:W.207, I:F.19 MYR.6: 5 residues within 4Å: Chain L: V.174, D.178, I.187, L.198, I.205 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:I.187, L:L.198, L:I.205 MYR.7: 2 residues within 4Å: Chain N: D.178, K.192 No protein-ligand interaction detected (PLIP) MYR.8: 5 residues within 4Å: Chain P: D.178, I.187, P.191, L.198, W.207 3 PLIP interactions: 3 interactions with chain P Hydrophobic interactions: P:P.191, P:L.198, P:W.207 MYR.9: 6 residues within 4Å: Chain Q: T.13 Chain R: V.174, L.177, D.178, I.187, I.205 2 PLIP interactions: 2 interactions with chain R Hydrophobic interactions: R:I.187, R:I.205 MYR.10: 6 residues within 4Å: Chain S: F.19 Chain T: D.178, L.181, I.187, P.191, W.207 4 PLIP interactions: 3 interactions with chain T, 1 interactions with chain S Hydrophobic interactions: T:L.181, T:I.187, T:W.207, S:F.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, M. et al., Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun (2021)

Release Date

2021-10-20

Peptides

Mu1: ACEGIKMOQS
Mu1: BDFHJLNPRT
mRNA (guanine-N(7)-)-methyltransferase: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
G

O
H

Q
I

S
J

B
a

D
b

F
c

H
d

J
e

L
f

N
g

P
h

R
i

T
j

U
K

Mu1

Mu1

mRNA (guanine-N(7)-)-methyltransferase

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