SMTL ID : 7enq.1 (1 other biounit)

Crystal structure of human NAMPT in complex with compound NAT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x J7F: 2-(2-~{tert}-butylphenoxy)-~{N}-(4-hydroxyphenyl)ethanamide(Non-covalent)

J7F.1: 10 residues within 4Å: Chain A: G.185, Y.188, H.191, F.193, V.242, A.244, S.275, I.309, I.351, A.379 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.242, A:I.309, A:I.351 Hydrogen bonds: A:S.275, A:S.275 pi-Stacking: A:H.191 J7F.4: 12 residues within 4Å: Chain B: G.185, Y.188, H.191, F.193, S.241, V.242, A.244, P.273, S.275, I.309, I.351, A.379 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.193, B:V.242, B:P.273, B:I.309, B:I.351 Water bridges: B:Y.188, B:H.191

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: R.40, R.392, C.397, K.400 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.40, A:S.398 Salt bridges: A:R.392, A:K.400 PO4.3: 5 residues within 4Å: Chain A: F.193, G.197, G.383, G.384 Chain B: R.392 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.383, A:G.384 Water bridges: A:G.197, A:G.385, B:R.392 Salt bridges: B:R.392 PO4.5: 5 residues within 4Å: Chain B: R.40, R.392, S.398, K.400, K.415 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.398 Water bridges: B:F.399, B:K.415 Salt bridges: B:R.40, B:R.392, B:K.400, B:K.415, B:K.423

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, H. et al., Discovery of small-molecule activators of nicotinamide phosphoribosyltransferase (NAMPT) and their preclinical neuroprotective activity. Cell Res. (2022)

Release Date

2022-05-04

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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