SMTL ID : 7enz.1

Crystal structure of Phenanthredinone moiety in complex with the second bromodomain of BRD2 (BRD2-BD2).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x LDR: phenanthridin-6(5H)-one(Non-covalent)

LDR.1: 7 residues within 4Å: Chain A: P.31, V.36, L.41, L.43, Y.88, N.89, H.93 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.31, A:V.36, A:L.41, A:L.43 Hydrogen bonds: A:N.89, A:N.89

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: P.7, L.10, K.11, N.14, M.63, E.64 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.11, A:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arole, A.H. et al., Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains. Acta Crystallogr.,Sect.F (2022)

Release Date

2022-03-09

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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