SMTL ID : 7eo5.1

Crystal structure of pyrano 1,3, oxazine derivative in complex with the second bromodomain of BRD2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 6 residues within 4Å: Chain A: P.7, L.10, K.11, N.14, M.63, E.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11 Water bridges: A:K.11 PGE.3: 6 residues within 4Å: Chain B: P.7, L.10, K.11, N.14, M.63, E.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.11 Water bridges: B:K.11

2 x BUX: 7-chloranyl-2-[(3-chlorophenyl)amino]pyrano[3,4-e][1,3]oxazine-4,5-dione(Non-covalent)

BUX.2: 9 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, C.85, Y.88, N.89 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.36, A:L.41, A:L.43 Hydrogen bonds: A:P.31 Water bridges: A:C.85 pi-Stacking: A:W.30 BUX.4: 9 residues within 4Å: Chain B: W.30, P.31, F.32, V.36, L.41, L.43, C.85, Y.88, N.89 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.36, B:L.41, B:L.43 Hydrogen bonds: B:P.31 Water bridges: B:C.85 pi-Stacking: B:W.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arole, A.H. et al., Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains. Acta Crystallogr.,Sect.F (2022)

Release Date

2022-03-09

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bromodomain-containing protein 2

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