SMTL ID : 7eo9.1

Crystal structure of KIF1A Motor-Neck domain with ADP-Mg-AlFx

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: R.11, R.13, P.14, S.58, Y.67, Q.98, T.99, G.100, A.101, G.102, K.103, S.104, Y.105, K.110 Ligands: AF3.2, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.58, A:S.58, A:Y.67, A:G.100, A:A.101, A:G.102, A:G.102, A:K.103, A:S.104, A:Y.105, A:K.110, A:K.110 Water bridges: A:T.99, A:K.103 Salt bridges: A:K.103 pi-Stacking: A:Y.105, A:Y.105

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.2: 7 residues within 4Å: Chain A: K.103, S.104, S.215, D.248, L.249 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: S.104, D.248 Ligands: ADP.1, AF3.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morikawa, M. et al., A neuropathy-associated kinesin KIF1A mutation hyper-stabilizes the motor-neck interaction during the ATPase cycle. Embo J. (2022)

Release Date

2021-12-29

Peptides

Kinesin-like protein KIF1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIF1A