SMTL ID : 7eoq.1

Structure of the human GluN1/GluN2A NMDA receptor in the glycine/CPP bound state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: P.686, N.687 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.686 NAG.3: 2 residues within 4Å: Chain B: N.276, A.279 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.276 NAG.4: 1 residues within 4Å: Chain B: N.771 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain B: N.471 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain C: P.686, N.687 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:P.686 NAG.8: 2 residues within 4Å: Chain D: N.276, A.279 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.276 NAG.9: 1 residues within 4Å: Chain D: N.771 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain D: N.471 No protein-ligand interaction detected (PLIP)

2 x 7RC: (2R)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid(Non-covalent)

7RC.2: 11 residues within 4Å: Chain A: H.485, S.511, L.512, T.513, V.685, G.688, S.689, T.690, Y.730, D.731, Y.761 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.513, A:V.685, A:S.689, A:T.690, A:Y.730, A:D.731 Salt bridges: A:H.485, A:D.731 7RC.7: 11 residues within 4Å: Chain C: H.485, S.511, L.512, T.513, V.685, G.688, S.689, T.690, Y.730, D.731, Y.761 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.513, C:V.685, C:V.685, C:S.689, C:T.690, C:Y.730, C:D.731 Salt bridges: C:H.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors. Neuron (2021)

Release Date

2021-06-30

Peptides

Glutamate receptor ionotropic, NMDA 2A: AC
Glutamate receptor ionotropic, NMDA 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 2A

Glutamate receptor ionotropic, NMDA 1

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