SMTL ID : 7eos.1

Structure of the human GluN1/GluN2A NMDA receptor in the glycine/glutamate bound state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.340 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: G.483, K.487, N.687 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain B: N.28, N.61 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain B: N.276, A.279, V.334 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain B: N.368, H.371, I.373 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain B: N.471 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain B: W.768, N.771 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain B: N.203, T.205 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain B: L.238, N.239 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain C: N.340 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain C: G.483, K.487, N.687 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain D: N.28, N.61 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain D: N.276, A.279, V.334 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain D: N.368, H.371, I.373 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain D: N.471 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain D: W.768, N.771 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain D: N.203, T.205 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain D: L.238, N.239 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors. Neuron (2021)

Release Date

2021-06-30

Peptides

Glutamate receptor ionotropic, NMDA 2A: AC
Glutamate receptor ionotropic, NMDA 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 2A

Glutamate receptor ionotropic, NMDA 1

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