SMTL ID : 7eot.1

Structure of the human GluN1/GluN2A NMDA receptor in the CGP-78608/glutamate bound state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.687 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain B: N.61 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain B: N.203, T.205, A.206 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain B: M.237, N.239 Ligand excluded by PLIP NAG.5: 1 residues within 4Å: Chain B: N.276 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain B: R.337, N.368, H.371, I.373 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain B: N.471 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain B: P.767, W.768, Q.770, N.771 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain C: N.687 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain D: N.61 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain D: N.203, T.205 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain D: M.237, N.239 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain D: N.276 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain D: R.337, N.368, H.371, I.373 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain D: N.471 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain D: P.767, W.768, Q.770, N.771 Ligand excluded by PLIP

2 x J86: [(1S)-1-[[7-bromanyl-2,3-bis(oxidanylidene)-1,4-dihydroquinoxalin-5-yl]methylamino]ethyl]phosphonic acid(Non-covalent)

J86.9: 11 residues within 4Å: Chain B: Q.405, F.484, P.516, L.517, T.518, R.523, S.687, S.688, W.731, D.732, V.735 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.484 Hydrogen bonds: B:P.516, B:T.518, B:Q.686, B:S.688 pi-Stacking: B:F.484 J86.18: 12 residues within 4Å: Chain D: Q.405, F.484, P.516, L.517, T.518, R.523, S.687, S.688, W.731, D.732, V.735, F.758 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.758 Hydrogen bonds: D:P.516, D:T.518 pi-Stacking: D:F.484, D:F.484

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors. Neuron (2021)

Release Date

2021-06-30

Peptides

Glutamate receptor ionotropic, NMDA 2A: AC
Glutamate receptor ionotropic, NMDA 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 2A

Glutamate receptor ionotropic, NMDA 1

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