SMTL ID : 7eox.2 (1 other biounit)

Protease structure from Euphorbia resinifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- XYP- MAN- MAN- FUC: beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-XYP-MAN-MAN-FUC.1: 1 residues within 4Å: Chain A: N.121 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.568, T.570, T.621 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.621 NAG.3: 2 residues within 4Å: Chain A: N.525, L.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.525

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 2 residues within 4Å: Chain A: R.328, S.380 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: G.180, K.214 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siritapetawee, J. et al., Sequence analysis and crystal structure of a glycosylated protease from Euphorbia resinifera latex for its proteolytic activity aspect. Biotechnol Appl Biochem (2022)

Release Date

2022-01-12

Peptides

Protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protease

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